IL_5NJT_112

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

5NJT|1|U|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_112 not in the Motif Atlas

Homologous match to IL_4WF9_047

Geometric discrepancy: 0.1631

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5NJT|1|U|G|1259
5NJT|1|U|A|1260
5NJT|1|U|C|1261
*
5NJT|1|U|G|1268
5NJT|1|U|A|1269
5NJT|1|U|C|1270

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L20

Chain k

50S ribosomal protein L21