IL_5NJT_113
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUGAGUAG*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_113 not in the Motif Atlas
- Homologous match to IL_4WF9_048
- Geometric discrepancy: 0.1262
- The information below is about IL_4WF9_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
5NJT|1|U|A|1302
5NJT|1|U|U|1303
5NJT|1|U|G|1304
5NJT|1|U|A|1305
5NJT|1|U|G|1306
5NJT|1|U|U|1307
5NJT|1|U|A|1308
5NJT|1|U|G|1309
*
5NJT|1|U|U|2040
5NJT|1|U|G|2041
5NJT|1|U|A|2042
5NJT|1|U|A|2043
5NJT|1|U|A|2044
5NJT|1|U|U|2045
5NJT|1|U|U|2046
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L32
Coloring options: