IL_5NJT_134

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5NJT|1|U|G|1744

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_134 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1318

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5NJT|1|U|C|1731
5NJT|1|U|G|1732
5NJT|1|U|U|1733
5NJT|1|U|A|1734
5NJT|1|U|A|1735
5NJT|1|U|C|1736
*
5NJT|1|U|G|1741
5NJT|1|U|G|1742
5NJT|1|U|A|1743
5NJT|1|U|G|1744
5NJT|1|U|A|1745
5NJT|1|U|A|1746
5NJT|1|U|G|1747

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain W

50S ribosomal protein L2