IL_5NJT_135

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUUAG*CGAGA

Length

11 nucleotides

Bulged bases

5NJT|1|U|U|1758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_135 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.2082

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5NJT|1|U|U|1756
5NJT|1|U|G|1757
5NJT|1|U|U|1758
5NJT|1|U|U|1759
5NJT|1|U|A|1760
5NJT|1|U|G|1761
*
5NJT|1|U|C|1772
5NJT|1|U|G|1773
5NJT|1|U|A|1774
5NJT|1|U|G|1775
5NJT|1|U|A|1776

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA