IL_5NJT_136

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGC*GAUC

Length

7 nucleotides

Bulged bases

5NJT|1|U|A|2010

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_136 not in the Motif Atlas

Geometric match to IL_3RW6_004

Geometric discrepancy: 0.2152

The information below is about IL_3RW6_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

5NJT|1|U|G|1798
5NJT|1|U|G|1799
5NJT|1|U|C|1800
*
5NJT|1|U|G|2009
5NJT|1|U|A|2010
5NJT|1|U|U|2011
5NJT|1|U|C|2012

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain W

50S ribosomal protein L2