IL_5NJT_137

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

5NJT|1|U|G|1830, 5NJT|1|U|A|1845, 5NJT|1|U|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_137 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1634

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5NJT|1|U|U|1827
5NJT|1|U|G|1828
5NJT|1|U|C|1829
5NJT|1|U|G|1830
5NJT|1|U|A|1831
5NJT|1|U|A|1832
5NJT|1|U|G|1833
*
5NJT|1|U|C|1842
5NJT|1|U|G|1843
5NJT|1|U|A|1844
5NJT|1|U|A|1845
5NJT|1|U|G|1846
5NJT|1|U|U|1847
5NJT|1|U|A|1848
5NJT|1|U|U|1849
5NJT|1|U|A|1850

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain W

50S ribosomal protein L2