IL_5NJT_143

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_143 not in the Motif Atlas

Homologous match to IL_5J7L_317

Geometric discrepancy: 0.1594

The information below is about IL_5J7L_317

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5NJT|1|U|U|1893
5NJT|1|U|U|1894
5NJT|1|U|A|1895
5NJT|1|U|G|1896
*
5NJT|1|U|C|1903
5NJT|1|U|G|1904
5NJT|1|U|A|1905
5NJT|1|U|A|1906
5NJT|1|U|G|1907

Current chains

Chain U

23S ribosomal RNA

Nearby chains