IL_5NJT_145
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 5NJT|1|U|A|1967, 5NJT|1|U|U|1973
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_145 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.2862
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
5NJT|1|U|C|1963
5NJT|1|U|G|1964
5NJT|1|U|A|1965
5NJT|1|U|A|1966
5NJT|1|U|A|1967
5NJT|1|U|U|1968
5NJT|1|U|U|1969
5NJT|1|U|C|1970
5NJT|1|U|C|1971
5NJT|1|U|U|1972
5NJT|1|U|U|1973
5NJT|1|U|G|1974
*
5NJT|1|U|C|1990
5NJT|1|U|C|1991
5NJT|1|U|C|1992
5NJT|1|U|G|1993
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain W
- 50S ribosomal protein L2
Coloring options: