IL_5NJT_155

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGGAAA*UGGAG

Length

13 nucleotides

Bulged bases

5NJT|1|U|G|2161

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_155 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.4007

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5NJT|1|U|C|2158
5NJT|1|U|U|2159
5NJT|1|U|U|2160
5NJT|1|U|G|2161
5NJT|1|U|G|2162
5NJT|1|U|A|2163
5NJT|1|U|A|2164
5NJT|1|U|A|2165
*
5NJT|1|U|U|2184
5NJT|1|U|G|2185
5NJT|1|U|G|2186
5NJT|1|U|A|2187
5NJT|1|U|G|2188

Current chains

Chain U

23S ribosomal RNA

Nearby chains