IL_5NJT_157

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CGCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_157 not in the Motif Atlas

Geometric match to IL_4WF9_086

Geometric discrepancy: 0.2358

The information below is about IL_4WF9_086

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_14250.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

10

Unit IDs

5NJT|1|U|C|2326
5NJT|1|U|A|2327
5NJT|1|U|G|2328
*
5NJT|1|U|C|2346
5NJT|1|U|G|2347
5NJT|1|U|C|2348
5NJT|1|U|A|2349
5NJT|1|U|G|2350

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain V

5S ribosomal RNA; 5S rRNA

Chain Z

50S ribosomal protein L5

Chain h

50S ribosomal protein L18