IL_5NJT_159

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

5NJT|1|U|U|2431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_159 not in the Motif Atlas

Geometric match to IL_6UFG_004

Geometric discrepancy: 0.1962

The information below is about IL_6UFG_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5NJT|1|U|U|2430
5NJT|1|U|U|2431
5NJT|1|U|C|2432
*
5NJT|1|U|G|2443
5NJT|1|U|G|2444

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L15

Chain q

50S ribosomal protein L33 1