IL_5NJT_164

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_164 not in the Motif Atlas

Homologous match to IL_4WF9_093

Geometric discrepancy: 0.1764

The information below is about IL_4WF9_093

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

5NJT|1|U|C|2495
5NJT|1|U|C|2496
5NJT|1|U|A|2497
5NJT|1|U|A|2498
5NJT|1|U|G|2499
*
5NJT|1|U|C|2509
5NJT|1|U|G|2510
5NJT|1|U|A|2511
5NJT|1|U|C|2512
5NJT|1|U|G|2513

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain f

50S ribosomal protein L16

Chain t

50S ribosomal protein L36