IL_5NJT_177

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_177 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1637

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

5NJT|1|U|U|2872
5NJT|1|U|G|2873
5NJT|1|U|G|2874
5NJT|1|U|A|2875
5NJT|1|U|A|2876
5NJT|1|U|G|2877
*
5NJT|1|U|U|2890
5NJT|1|U|G|2891
5NJT|1|U|G|2892
5NJT|1|U|A|2893
5NJT|1|U|G|2894

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L17

Chain i

50S ribosomal protein L19