IL_5NJT_178

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5NJT|1|V|A|64

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_178 not in the Motif Atlas

Homologous match to IL_7RQB_111

Geometric discrepancy: 0.1845

The information below is about IL_7RQB_111

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5NJT|1|V|C|15
5NJT|1|V|G|16
*
5NJT|1|V|C|63
5NJT|1|V|A|64
5NJT|1|V|G|65

Current chains

Chain V

5S ribosomal RNA

Nearby chains

Chain U

Large subunit ribosomal RNA; LSU rRNA