IL_5NJT_182
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUGGUAG*UGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_182 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1687
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5NJT|1|V|C|69
5NJT|1|V|G|70
5NJT|1|V|A|71
5NJT|1|V|U|72
5NJT|1|V|G|73
5NJT|1|V|G|74
5NJT|1|V|U|75
5NJT|1|V|A|76
5NJT|1|V|G|77
*
5NJT|1|V|U|95
5NJT|1|V|G|96
5NJT|1|V|A|97
5NJT|1|V|G|98
5NJT|1|V|A|99
5NJT|1|V|G|100
5NJT|1|V|U|101
5NJT|1|V|A|102
5NJT|1|V|G|103
Current chains
- Chain V
- 5S ribosomal RNA
Nearby chains
- Chain U
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L16
- Chain o
- 50S ribosomal protein L27
Coloring options: