IL_5NJT_192

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUAG*CGU

Length

7 nucleotides

Bulged bases

5NJT|1|U|A|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_192 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2017

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

5NJT|1|U|A|1534
5NJT|1|U|U|1535
5NJT|1|U|A|1536
5NJT|1|U|G|1537
*
5NJT|1|U|C|1545
5NJT|1|U|G|1546
5NJT|1|U|U|1547

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L2