IL_5NO2_046

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GCUGCAU*AUG(2MG)C

Length

12 nucleotides

Bulged bases

5NO2|1|A|C|1054

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO2_046 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3698

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5NO2|1|A|G|1050
5NO2|1|A|C|1051
5NO2|1|A|U|1052
5NO2|1|A|G|1053
5NO2|1|A|C|1054
5NO2|1|A|A|1055
5NO2|1|A|U|1056
*
5NO2|1|A|A|1204
5NO2|1|A|U|1205
5NO2|1|A|G|1206
5NO2|1|A|2MG|1207
5NO2|1|A|C|1208

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14