IL_5NO2_058

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO2_058 not in the Motif Atlas

Homologous match to IL_5J7L_059

Geometric discrepancy: 0.195

The information below is about IL_5J7L_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5NO2|1|A|G|1401
5NO2|1|A|4OC|1402
5NO2|1|A|C|1403
5NO2|1|A|C|1404
*
5NO2|1|A|G|1497
5NO2|1|A|UR3|1498
5NO2|1|A|A|1499
5NO2|1|A|A|1500
5NO2|1|A|C|1501

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Z

Small ribosomal subunit biogenesis GTPase RsgA