IL_5NO3_025

3D structure

PDB id

5NO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5NO3|1|A|A|532, 5NO3|1|A|U|534, 5NO3|1|A|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO3_025 not in the Motif Atlas

Homologous match to IL_5J7L_025

Geometric discrepancy: 0.2071

The information below is about IL_5J7L_025

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5NO3|1|A|G|515
5NO3|1|A|PSU|516
5NO3|1|A|G|517
5NO3|1|A|C|518
5NO3|1|A|C|519
5NO3|1|A|A|520
5NO3|1|A|G|521
*
5NO3|1|A|C|528
5NO3|1|A|G|529
5NO3|1|A|G|530
5NO3|1|A|U|531
5NO3|1|A|A|532
5NO3|1|A|A|533
5NO3|1|A|U|534
5NO3|1|A|A|535
5NO3|1|A|C|536

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain Z

Small ribosomal subunit biogenesis GTPase RsgA