IL_5NO3_047

3D structure

PDB id

5NO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

5NO3|1|A|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO3_047 not in the Motif Atlas

Geometric match to IL_5VSU_002

Geometric discrepancy: 0.3957

The information below is about IL_5VSU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5NO3|1|A|U|1052
5NO3|1|A|G|1053
5NO3|1|A|C|1054
5NO3|1|A|A|1055
5NO3|1|A|U|1056
*
5NO3|1|A|A|1204
5NO3|1|A|U|1205
5NO3|1|A|G|1206

Current chains

Chain A

16S ribosomal RNA

Nearby chains