IL_5NO3_047
3D structure
- PDB id
- 5NO3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.16 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 5NO3|1|A|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NO3_047 not in the Motif Atlas
- Geometric match to IL_5VSU_002
- Geometric discrepancy: 0.3957
- The information below is about IL_5VSU_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73028.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NO3|1|A|U|1052
5NO3|1|A|G|1053
5NO3|1|A|C|1054
5NO3|1|A|A|1055
5NO3|1|A|U|1056
*
5NO3|1|A|A|1204
5NO3|1|A|U|1205
5NO3|1|A|G|1206
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: