3D structure

PDB id
5NO3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.16 Å

Loop

Sequence
CGGAUU*AUGAAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5NO3_057 not in the Motif Atlas
Homologous match to IL_5J7L_057
Geometric discrepancy: 0.095
The information below is about IL_5J7L_057
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85536.2
Basepair signature
cWW-tSH-L-R-tHS-cWW-cWW
Number of instances in this motif group
8

Unit IDs

5NO3|1|A|C|1303
5NO3|1|A|G|1304
5NO3|1|A|G|1305
5NO3|1|A|A|1306
5NO3|1|A|U|1307
5NO3|1|A|U|1308
*
5NO3|1|A|A|1329
5NO3|1|A|U|1330
5NO3|1|A|G|1331
5NO3|1|A|A|1332
5NO3|1|A|A|1333
5NO3|1|A|G|1334

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain M
30S ribosomal protein S13

Coloring options:


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