IL_5NO3_074
3D structure
- PDB id
- 5NO3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.16 Å
Loop
- Sequence
- GAAGUU*AAUGUGCCUUCGGGAAC
- Length
- 23 nucleotides
- Bulged bases
- 5NO3|1|A|U|1030
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NO3_074 not in the Motif Atlas
- Homologous match to IL_5J7L_045
- Geometric discrepancy: 0.2032
- The information below is about IL_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13394.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R
- Number of instances in this motif group
- 1
Unit IDs
5NO3|1|A|G|1003
5NO3|1|A|A|1004
5NO3|1|A|A|1005
5NO3|1|A|G|1006
5NO3|1|A|U|1007
5NO3|1|A|U|1008
*
5NO3|1|A|A|1021
5NO3|1|A|A|1022
5NO3|1|A|U|1023
5NO3|1|A|G|1024
5NO3|1|A|U|1025
5NO3|1|A|G|1026
5NO3|1|A|C|1027
5NO3|1|A|C|1028
5NO3|1|A|U|1029
5NO3|1|A|U|1030
5NO3|1|A|C|1031
5NO3|1|A|G|1032
5NO3|1|A|G|1033
5NO3|1|A|G|1034
5NO3|1|A|A|1035
5NO3|1|A|A|1036
5NO3|1|A|C|1037
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain N
- 30S ribosomal protein S14
Coloring options: