IL_5NO3_077

3D structure

PDB id

5NO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO3_077 not in the Motif Atlas

Homologous match to IL_4LFB_070

Geometric discrepancy: 0.4818

The information below is about IL_4LFB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

5NO3|1|A|5MC|1407
5NO3|1|A|A|1408
5NO3|1|A|C|1409
*
5NO3|1|A|G|1491
5NO3|1|A|A|1492
5NO3|1|A|A|1493
5NO3|1|A|G|1494

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Z

Small ribosomal subunit biogenesis GTPase RsgA