IL_5NO4_039

3D structure

PDB id

5NO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases (A, C, G, U)

1394A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO4_039 not in the Motif Atlas

Homologous match to IL_5J7L_039

Geometric discrepancy: 0.2065

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

120

Unit IDs

5NO4|1|A|G|922
5NO4|1|A|A|923
*
5NO4|1|A|U|1393
5NO4|1|A|A|1394
5NO4|1|A|C|1395

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S5