5NO4 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5NO4_001 | No text annotation | ||
| HL_5NO4_002 | No text annotation | ||
| HL_5NO4_003 | GNRA | ||
| HL_5NO4_004 | GNRA | ||
| HL_5NO4_033 | No text annotation | ||
| HL_5NO4_005 | UNCG | ||
| HL_5NO4_006 | GNRA related | ||
| HL_5NO4_007 | GNRA | ||
| HL_5NO4_008 | No text annotation | ||
| HL_5NO4_009 | UNCG | ||
| HL_5NO4_010 | GNRA | ||
| HL_5NO4_011 | UNCG | ||
| HL_5NO4_012 | GNRA wlth extra near cWW | ||
| HL_5NO4_013 | No text annotation | ||
| HL_5NO4_034 | GNRA variation | ||
| HL_5NO4_014 | GNRA-like with tWH | ||
| HL_5NO4_015 | No text annotation | ||
| HL_5NO4_016 | GNRA | ||
| HL_5NO4_017 | No text annotation | ||
| HL_5NO4_018 | No text annotation | ||
| HL_5NO4_019 | GNRA | ||
| HL_5NO4_020 | GNRA | ||
| HL_5NO4_021 | No text annotation | ||
| HL_5NO4_035 | No text annotation | ||
| HL_5NO4_022 | No text annotation | ||
| HL_5NO4_036 | GNRA | ||
| HL_5NO4_023 | No text annotation | ||
| HL_5NO4_024 | GNRA | ||
| HL_5NO4_025 | T-loop related | ||
| HL_5NO4_026 | No text annotation | ||
| HL_5NO4_027 | GNRA | ||
| HL_5NO4_028 | GNRA | ||
| HL_5NO4_029 | T-loop with 3 stacked bulged bases | ||
| HL_5NO4_030 | No text annotation | ||
| HL_5NO4_031 | UNCG | ||
| HL_5NO4_032 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5NO4_016 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5NO4_065 | Isolated non-canonical cWW pair | ||
| IL_5NO4_001 | Single bulged G | ||
| IL_5NO4_002 | Single bulged A | ||
| IL_5NO4_003 | No text annotation | ||
| IL_5NO4_004 | Minor groove platform | ||
| IL_5NO4_005 | Multiple bulged bases | ||
| IL_5NO4_006 | Minor groove platform with extra cWW | ||
| IL_5NO4_007 | Minor groove platform | ||
| IL_5NO4_066 | Single bulged G | ||
| IL_5NO4_008 | Single bulged G, near cWW | ||
| IL_5NO4_009 | Isolated non-canonical cWW pair | ||
| IL_5NO4_010 | No text annotation | ||
| IL_5NO4_011 | Isolated cWH basepair | ||
| IL_5NO4_012 | tWH-tWH-tHW-tHW | ||
| IL_5NO4_013 | Minor groove platform | ||
| IL_5NO4_014 | Kink-turn with non-sequential stacking | ||
| IL_5NO4_015 | No text annotation | ||
| IL_5NO4_017 | Single bulged U | ||
| IL_5NO4_018 | C-loop | ||
| IL_5NO4_019 | Single bulged G | ||
| IL_5NO4_020 | No text annotation | ||
| IL_5NO4_021 | No text annotation | ||
| IL_5NO4_022 | tSH-tHW-tWW | ||
| IL_5NO4_023 | No text annotation | ||
| IL_5NO4_024 | SSU/LSU pseudoknot | ||
| IL_5NO4_025 | Kink-turn related | ||
| IL_5NO4_026 | No text annotation | ||
| IL_5NO4_067 | tSH-tHW-tHS | ||
| IL_5NO4_027 | No text annotation | ||
| IL_5NO4_028 | Major groove platform | ||
| IL_5NO4_029 | Major groove minor groove platform; mini C-loop | ||
| IL_5NO4_068 | No text annotation | ||
| IL_5NO4_030 | No text annotation | ||
| IL_5NO4_031 | Major groove platform; stack outside cWW | ||
| IL_5NO4_032 | Single stack bend | ||
| IL_5NO4_033 | Tandem non-canonical cWW pairs | ||
| IL_5NO4_069 | Triple non-canonical cWW pairs | ||
| IL_5NO4_034 | No text annotation | ||
| IL_5NO4_070 | Kink-turn | ||
| IL_5NO4_035 | Kink-turn | ||
| IL_5NO4_036 | Left turn | ||
| IL_5NO4_037 | tSH-tHW-tHS | ||
| IL_5NO4_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_5NO4_039 | Single bulged A | ||
| IL_5NO4_040 | Single bulged G | ||
| IL_5NO4_041 | Minor groove platform | ||
| IL_5NO4_042 | Minor groove platform | ||
| IL_5NO4_071 | No text annotation | ||
| IL_5NO4_043 | Minor groove platform | ||
| IL_5NO4_044 | Single stack bend | ||
| IL_5NO4_045 | Single bulged U | ||
| IL_5NO4_046 | No text annotation | ||
| IL_5NO4_072 | Isolated cWS basepair | ||
| IL_5NO4_047 | Minor groove platform | ||
| IL_5NO4_048 | Single bulged A | ||
| IL_5NO4_049 | Isolated non-canonical cWW pair | ||
| IL_5NO4_050 | No text annotation | ||
| IL_5NO4_051 | Minor groove platform | ||
| IL_5NO4_052 | No text annotation | ||
| IL_5NO4_053 | No text annotation | ||
| IL_5NO4_054 | 180 degree turn | ||
| IL_5NO4_055 | Double sheared with non-canonical cWW | ||
| IL_5NO4_056 | No text annotation | ||
| IL_5NO4_057 | No text annotation | ||
| IL_5NO4_058 | No text annotation | ||
| IL_5NO4_073 | Isolated non-canonical cWW pair | ||
| IL_5NO4_059 | No text annotation | ||
| IL_5NO4_074 | No text annotation | ||
| IL_5NO4_060 | Isolated non-canonical cWW pair | ||
| IL_5NO4_061 | Double sheared | ||
| IL_5NO4_062 | Triple sheared related | ||
| IL_5NO4_063 | Single bulged A | ||
| IL_5NO4_064 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5NO4_001 | No text annotation | ||
| J3_5NO4_013 | No text annotation | ||
| J3_5NO4_002 | No text annotation | ||
| J3_5NO4_014 | No text annotation | ||
| J3_5NO4_003 | No text annotation | ||
| J3_5NO4_004 | No text annotation | ||
| J3_5NO4_015 | No text annotation | ||
| J3_5NO4_005 | No text annotation | ||
| J3_5NO4_006 | No text annotation | ||
| J3_5NO4_007 | No text annotation | ||
| J3_5NO4_016 | No text annotation | ||
| J3_5NO4_008 | No text annotation | ||
| J3_5NO4_017 | No text annotation | ||
| J3_5NO4_009 | No text annotation | ||
| J3_5NO4_010 | No text annotation | ||
| J3_5NO4_011 | No text annotation | ||
| J3_5NO4_018 | No text annotation | ||
| J3_5NO4_012 | No text annotation | ||
| J4_5NO4_001 | No text annotation | ||
| J4_5NO4_002 | No text annotation | ||
| J4_5NO4_004 | No text annotation | ||
| J4_5NO4_003 | No text annotation | ||
| J5_5NO4_001 | No text annotation | ||
| J5_5NO4_002 | No text annotation | ||
| J5_5NO4_003 | No text annotation |
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