5NO4 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5NO4_001 | 1/A/12:22 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_5NO4_002 | 1/A/77:92 | No text annotation Not in a motif group | ||
| HL_5NO4_003 | 1/A/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_85603.1 | |
| HL_5NO4_004 | 1/A/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_85603.1 | |
| HL_5NO4_005 | 1/A/207:212 | UNCG Not in a motif group | homologous HL_5J7L_005 HL_29960.1 | |
| HL_5NO4_006 | 1/A/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.3 | |
| HL_5NO4_007 | 1/A/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
| HL_5NO4_008 | 1/A/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_5NO4_009 | 1/A/342:347 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_29960.1 | |
| HL_5NO4_010 | 1/A/379:384 | GNRA Not in a motif group | homologous HL_6CZR_081 HL_85603.1 | |
| HL_5NO4_011 | 1/A/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_29960.1 | |
| HL_5NO4_012 | 1/A/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.3 | |
| HL_5NO4_013 | 1/A/521:528 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.5 | |
| HL_5NO4_014 | 1/A/617:623 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.3 | |
| HL_5NO4_015 | 1/A/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.2 | |
| HL_5NO4_016 | 1/A/726:731 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.3 | |
| HL_5NO4_017 | 1/A/786:796 | No text annotation Not in a motif group | homologous HL_4LFB_017 HL_12326.2 | |
| HL_5NO4_018 | 1/A/840:846 | No text annotation Not in a motif group | ||
| HL_5NO4_019 | 1/A/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_85603.1 | |
| HL_5NO4_020 | 1/A/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_85603.1 | |
| HL_5NO4_021 | 1/A/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_5NO4_022 | 1/A/1011:1018 | No text annotation Not in a motif group | homologous HL_6CZR_093 NA | |
| HL_5NO4_023 | 1/A/1027:1033 | No text annotation Not in a motif group | ||
| HL_5NO4_024 | 1/A/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.1 | |
| HL_5NO4_025 | 1/A/1089:1096 | No text annotation Not in a motif group | homologous HL_5J7L_024 HL_71554.2 | |
| HL_5NO4_026 | 1/A/1133:1141 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_66421.1 | |
| HL_5NO4_027 | 1/A/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.4 | |
| HL_5NO4_028 | 1/A/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_85603.1 | |
| HL_5NO4_029 | 1/A/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_41998.2 | |
| HL_5NO4_030 | 1/A/1356:1366 | No text annotation Not in a motif group | homologous HL_5J7L_029 HL_96366.1 | |
| HL_5NO4_031 | 1/A/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_29960.1 | |
| HL_5NO4_032 | 1/A/1515:1520 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5NO4_001 | 1/A/30:32, 1/A/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.4 | |
| IL_5NO4_002 | 1/A/44:45, 1/A/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.7 | |
| IL_5NO4_003 | 1/A/47:52, 1/A/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_14177.1 | |
| IL_5NO4_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_80097.2 | |
| IL_5NO4_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_5NO4_006 | 1/A/67:69, 1/A/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_5NO4_007 | 1/A/70:73, 1/A/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_5NO4_008 | 1/A/75:77, 1/A/92:95 | Single bulged G, near cWW Not in a motif group | geometric IL_5J7L_008 IL_43275.2 | |
| IL_5NO4_009 | 1/A/128:131, 1/A/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_43275.2 | |
| IL_5NO4_010 | 1/A/132:136, 1/A/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.4 | |
| IL_5NO4_011 | 1/A/144:146, 1/A/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_70707.3 | |
| IL_5NO4_012 | 1/A/147:153, 1/A/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_5NO4_013 | 1/A/203:206, 1/A/213:214 | Minor groove platform Not in a motif group | geometric IL_5J7L_007 IL_15052.1 | |
| IL_5NO4_014 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.3 | |
| IL_5NO4_015 | 1/A/249:252, 1/A/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_5NO4_016 | 1/A/292:293, 1/A/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_5NO4_017 | 1/A/367:369, 1/A/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.17 | |
| IL_5NO4_018 | 1/A/371:375, 1/A/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_5NO4_019 | 1/A/375:376, 1/A/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.4 | |
| IL_5NO4_020 | 1/A/409:416, 1/A/427:433 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_5NO4_021 | 1/A/440:442, 1/A/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_5NO4_022 | 1/A/446:450, 1/A/483:488 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
| IL_5NO4_023 | 1/A/450:455, 1/A/477:483 | No text annotation Not in a motif group | homologous IL_5J7L_023 IL_70801.1 | |
| IL_5NO4_024 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.8 | |
| IL_5NO4_025 | 1/A/515:521, 1/A/528:536 | No text annotation Not in a motif group | homologous IL_5J7L_025 NA | |
| IL_5NO4_026 | 1/A/569:575, 1/A/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
| IL_5NO4_027 | 1/A/580:585, 1/A/756:761 | No text annotation Not in a motif group | ||
| IL_5NO4_028 | 1/A/594:596, 1/A/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.4 | |
| IL_5NO4_029 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.9 | |
| IL_5NO4_030 | 1/A/605:612, 1/A/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_5NO4_031 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.3 | |
| IL_5NO4_032 | 1/A/658:659, 1/A/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.5 | |
| IL_5NO4_033 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_5NO4_034 | 1/A/673:678, 1/A/712:717 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.2 | |
| IL_5NO4_035 | 1/A/684:688, 1/A/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.3 | |
| IL_5NO4_036 | 1/A/774:778, 1/A/804:805 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_5NO4_037 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.2 | |
| IL_5NO4_038 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_5NO4_039 | 1/A/922:923, 1/A/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.7 | |
| IL_5NO4_040 | 1/A/925:927, 1/A/1390:1391 | Single bulged G Not in a motif group | homologous IL_4LFB_036 IL_00225.4 | |
| IL_5NO4_041 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform Not in a motif group | homologous IL_4LFB_037 IL_47078.1 | |
| IL_5NO4_042 | 1/A/953:954, 1/A/1226:1228 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.5 | |
| IL_5NO4_043 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform Not in a motif group | homologous IL_5J7L_043 IL_47078.1 | |
| IL_5NO4_044 | 1/A/998:999, 1/A/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.5 | |
| IL_5NO4_045 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U Not in a motif group | geometric IL_5J7L_046 IL_83039.17 | |
| IL_5NO4_046 | 1/A/1050:1056, 1/A/1204:1208 | No text annotation Not in a motif group | homologous IL_5J7L_047 NA | |
| IL_5NO4_047 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_80097.2 | |
| IL_5NO4_048 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.7 | |
| IL_5NO4_049 | 1/A/1061:1063, 1/A/1193:1195 | No text annotation Not in a motif group | homologous IL_5J7L_050 IL_86319.3 | |
| IL_5NO4_050 | 1/A/1124:1128, 1/A/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_5NO4_051 | 1/A/1129:1132, 1/A/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_5NO4_052 | 1/A/1158:1161, 1/A/1175:1181 | No text annotation Not in a motif group | homologous IL_5J7L_053 IL_42032.1 | |
| IL_5NO4_053 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_5NO4_054 | 1/A/1255:1258, 1/A/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_5NO4_055 | 1/A/1259:1263, 1/A/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.9 | |
| IL_5NO4_056 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation Not in a motif group | homologous IL_5J7L_057 IL_19954.2 | |
| IL_5NO4_057 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_5NO4_058 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation Not in a motif group | homologous IL_5J7L_059 NA | |
| IL_5NO4_059 | 1/A/1405:1409, 1/A/1491:1496 | No text annotation Not in a motif group | homologous IL_4LFB_058 NA | |
| IL_5NO4_060 | 1/A/1412:1414, 1/A/1486:1488 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_86319.3 | |
| IL_5NO4_061 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared Not in a motif group | homologous IL_4LFB_060 IL_09705.11 | |
| IL_5NO4_062 | 1/A/1430:1435, 1/A/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_5NO4_063 | 1/A/1440:1442, 1/A/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.5 | |
| IL_5NO4_064 | 1/A/1445:1448, 1/A/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.7 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5NO4_001 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_5NO4_002 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_5NO4_003 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_5NO4_004 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_5NO4_005 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_5NO4_006 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation Not in a motif group | ||
| J3_5NO4_007 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation Not in a motif group | homologous J3_5J7L_007 NA | |
| J3_5NO4_008 | 1/A/1002:1009, 1/A/1020:1027, 1/A/1033:1038 | No text annotation Not in a motif group | ||
| J3_5NO4_009 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation Not in a motif group | ||
| J3_5NO4_010 | 1/A/1073:1074, 1/A/1083:1087, 1/A/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_5NO4_011 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_5NO4_012 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation Not in a motif group | homologous J3_5J7L_011 NA |
Problematic loops
No problematic loops
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