IL_5NO4_040

3D structure

PDB id

5NO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

5NO4|1|A|G|926

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO4_040 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1866

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

5NO4|1|A|G|925
5NO4|1|A|G|926
5NO4|1|A|G|927
*
5NO4|1|A|U|1390
5NO4|1|A|U|1391

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Z

Small ribosomal subunit biogenesis GTPase RsgA