IL_5NO4_065

3D structure

PDB id

5NO4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

UUGA*UAA

Length

7 nucleotides

Bulged bases

5NO4|1|A|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO4_065 not in the Motif Atlas

Geometric match to IL_5TBW_021

Geometric discrepancy: 0.179

The information below is about IL_5TBW_021

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5NO4|1|A|U|29
5NO4|1|A|U|30
5NO4|1|A|G|31
5NO4|1|A|A|32
*
5NO4|1|A|U|552
5NO4|1|A|A|553
5NO4|1|A|A|554

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

30S ribosomal protein S4