IL_5NP6_023

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

5NP6|1|D|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_023 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1433

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5NP6|1|D|G|446
5NP6|1|D|G|447
5NP6|1|D|A|448
5NP6|1|D|G|449
5NP6|1|D|G|450
*
5NP6|1|D|C|483
5NP6|1|D|G|484
5NP6|1|D|U|485
5NP6|1|D|U|486
5NP6|1|D|A|487
5NP6|1|D|C|488

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S4

Chain S

30S ribosomal protein S16