IL_5NP6_077
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 5NP6|1|Y|A|504, 5NP6|1|Y|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NP6_077 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.128
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
5NP6|1|Y|G|481
5NP6|1|Y|A|482
5NP6|1|Y|A|483
5NP6|1|Y|C|484
*
5NP6|1|Y|G|496
5NP6|1|Y|A|497
5NP6|1|Y|G|498
5NP6|1|Y|U|499
5NP6|1|Y|G|500
5NP6|1|Y|A|501
5NP6|1|Y|A|502
5NP6|1|Y|A|503
5NP6|1|Y|A|504
5NP6|1|Y|A|505
5NP6|1|Y|G|506
5NP6|1|Y|A|507
5NP6|1|Y|A|508
5NP6|1|Y|C|509
Current chains
- Chain Y
- 23S ribosomal RNA
Nearby chains
- Chain C
- DNA topoisomerase small subunit
- Chain q
- 50S ribosomal protein L22
- Chain s
- 50S ribosomal protein L24
Coloring options: