IL_5NP6_097

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

5NP6|1|Y|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_097 not in the Motif Atlas

Geometric match to IL_4V88_398

Geometric discrepancy: 0.2617

The information below is about IL_4V88_398

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5NP6|1|Y|G|880
5NP6|1|Y|G|881
5NP6|1|Y|G|882
*
5NP6|1|Y|U|894
5NP6|1|Y|U|895
5NP6|1|Y|A|896
5NP6|1|Y|C|897

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L16