IL_5NP6_112

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_112 not in the Motif Atlas

Homologous match to IL_4WF9_049

Geometric discrepancy: 0.1906

The information below is about IL_4WF9_049

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

5NP6|1|Y|G|1310
5NP6|1|Y|G|1311
5NP6|1|Y|U|1312
5NP6|1|Y|U|1313
*
5NP6|1|Y|A|1603
5NP6|1|Y|C|1604

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain r

50S ribosomal protein L23