IL_5NP6_144

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GU(7MG)A*UCC

Length

7 nucleotides

Bulged bases

5NP6|1|Y|U|2068

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_144 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1557

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5NP6|1|Y|G|2067
5NP6|1|Y|U|2068
5NP6|1|Y|7MG|2069
5NP6|1|Y|A|2070
*
5NP6|1|Y|U|2441
5NP6|1|Y|C|2442
5NP6|1|Y|C|2443

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain C

DNA topoisomerase small subunit

Chain c

50S ribosomal protein L4

Chain j

50S ribosomal protein L15