IL_5NP6_155

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGG*CA(OMC)CU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_155 not in the Motif Atlas

Homologous match to IL_5J7L_335

Geometric discrepancy: 0.2576

The information below is about IL_5J7L_335

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NP6|1|Y|A|2453
5NP6|1|Y|G|2454
5NP6|1|Y|G|2455
*
5NP6|1|Y|C|2496
5NP6|1|Y|A|2497
5NP6|1|Y|OMC|2498
5NP6|1|Y|C|2499
5NP6|1|Y|U|2500

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain C

DNA topoisomerase small subunit

Chain b

50S ribosomal protein L3

Chain k

50S ribosomal protein L16