Loop IL_5NP6

3D structure

PDB id: 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: 70S structure prior to bypassing
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

Loop

Sequence: CCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCACUGGUCGAG
Length: 60 nucleotides
Bulged bases: 5NP6|1|Y|C|1045, 5NP6|1|Y|A|1046, 5NP6|1|Y|C|1053, 5NP6|1|Y|U|1061, 5NP6|1|Y|U|1066, 5NP6|1|Y|A|1070
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5NP6|1|Y|C|1043
5NP6|1|Y|C|1044
5NP6|1|Y|C|1045
5NP6|1|Y|A|1046
5NP6|1|Y|G|1047
5NP6|1|Y|A|1048
5NP6|1|Y|C|1049
5NP6|1|Y|A|1050
5NP6|1|Y|G|1051
5NP6|1|Y|C|1052
5NP6|1|Y|C|1053
5NP6|1|Y|A|1054
5NP6|1|Y|G|1055
5NP6|1|Y|G|1056
5NP6|1|Y|A|1057
5NP6|1|Y|U|1058
5NP6|1|Y|G|1059
5NP6|1|Y|U|1060
5NP6|1|Y|U|1061
5NP6|1|Y|G|1062
5NP6|1|Y|G|1063
5NP6|1|Y|C|1064
5NP6|1|Y|U|1065
5NP6|1|Y|U|1066
5NP6|1|Y|A|1067
5NP6|1|Y|G|1068
5NP6|1|Y|A|1069
5NP6|1|Y|A|1070
5NP6|1|Y|G|1071
5NP6|1|Y|C|1072
5NP6|1|Y|A|1073
5NP6|1|Y|G|1074
5NP6|1|Y|C|1075
5NP6|1|Y|C|1076
5NP6|1|Y|A|1077
5NP6|1|Y|U|1078
5NP6|1|Y|C|1079
5NP6|1|Y|A|1080
5NP6|1|Y|U|1081
5NP6|1|Y|U|1082
5NP6|1|Y|U|1083
5NP6|1|Y|A|1084
5NP6|1|Y|A|1085
5NP6|1|Y|A|1086
5NP6|1|Y|G|1087
5NP6|1|Y|A|1088
5NP6|1|Y|A|1089
5NP6|1|Y|A|1090
*
5NP6|1|Y|U|1101
5NP6|1|Y|C|1102
5NP6|1|Y|A|1103
5NP6|1|Y|C|1104
5NP6|1|Y|U|1105
5NP6|1|Y|G|1106
5NP6|1|Y|G|1107
5NP6|1|Y|U|1108
5NP6|1|Y|C|1109
5NP6|1|Y|G|1110
5NP6|1|Y|A|1111
5NP6|1|Y|G|1112

Current chains

Chain Y: 23S ribosomal RNA

Nearby chains

Chain 2: 50S ribosomal protein L36
Chain 3: 50S ribosomal protein L10
Chain e: 50S ribosomal protein L6
Chain g: 50S ribosomal protein L11

IL_5NP6_187