IL_5NP6_199

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUG*CACUG

Length

8 nucleotides

Bulged bases

5NP6|1|Y|C|2712, 5NP6|1|Y|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_199 not in the Motif Atlas

Geometric match to IL_7A0S_042

Geometric discrepancy: 0.2969

The information below is about IL_7A0S_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5NP6|1|Y|U|2695
5NP6|1|Y|U|2696
5NP6|1|Y|G|2697
*
5NP6|1|Y|C|2710
5NP6|1|Y|A|2711
5NP6|1|Y|C|2712
5NP6|1|Y|U|2713
5NP6|1|Y|G|2714

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L17

Chain n

50S ribosomal protein L19