IL_5NP6_200

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

5NP6|1|Y|A|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_200 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2601

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5NP6|1|Y|G|2838
5NP6|1|Y|G|2839
5NP6|1|Y|C|2840
*
5NP6|1|Y|G|2877
5NP6|1|Y|U|2878
5NP6|1|Y|A|2879
5NP6|1|Y|C|2880

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L17

Chain n

50S ribosomal protein L19