IL_5NRG_007

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_007 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0634

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5NRG|1|X|C|241
5NRG|1|X|U|242
5NRG|1|X|U|243
5NRG|1|X|A|244
5NRG|1|X|G|245
5NRG|1|X|U|246
5NRG|1|X|A|247
5NRG|1|X|G|248
*
5NRG|1|X|C|256
5NRG|1|X|G|257
5NRG|1|X|A|258
5NRG|1|X|A|259
5NRG|1|X|A|260
5NRG|1|X|C|261
5NRG|1|X|G|262

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15