IL_5NRG_016

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5NRG|1|X|G|846, 5NRG|1|X|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_016 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0699

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

5NRG|1|X|G|719
5NRG|1|X|A|720
5NRG|1|X|A|721
5NRG|1|X|A|722
5NRG|1|X|C|723
*
5NRG|1|X|G|844
5NRG|1|X|A|845
5NRG|1|X|G|846
5NRG|1|X|A|847
5NRG|1|X|U|848
5NRG|1|X|A|849
5NRG|1|X|G|850
5NRG|1|X|C|851

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15