IL_5NRG_040
3D structure
- PDB id
- 5NRG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- GUGAGUAG*UGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NRG_040 not in the Motif Atlas
- Homologous match to IL_4WF9_048
- Geometric discrepancy: 0.1028
- The information below is about IL_4WF9_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
5NRG|1|X|G|1300
5NRG|1|X|U|1301
5NRG|1|X|G|1302
5NRG|1|X|A|1303
5NRG|1|X|G|1304
5NRG|1|X|U|1305
5NRG|1|X|A|1306
5NRG|1|X|G|1307
*
5NRG|1|X|U|2038
5NRG|1|X|G|2039
5NRG|1|X|A|2040
5NRG|1|X|A|2041
5NRG|1|X|A|2042
5NRG|1|X|U|2043
5NRG|1|X|C|2044
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain K
- 50S ribosomal protein L17
- Chain P
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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