IL_5NRG_048

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GCGAAGCGUGCGAUUGGAUGCACGUC*GGGGAGAGAGUCGUU

Length

41 nucleotides

Bulged bases

5NRG|1|X|A|1497, 5NRG|1|X|A|1502

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NRG|1|X|G|1485
5NRG|1|X|C|1486
5NRG|1|X|G|1487
5NRG|1|X|A|1488
5NRG|1|X|A|1489
5NRG|1|X|G|1490
5NRG|1|X|C|1491
5NRG|1|X|G|1492
5NRG|1|X|U|1493
5NRG|1|X|G|1494
5NRG|1|X|C|1495
5NRG|1|X|G|1496
5NRG|1|X|A|1497
5NRG|1|X|U|1498
5NRG|1|X|U|1499
5NRG|1|X|G|1500
5NRG|1|X|G|1501
5NRG|1|X|A|1502
5NRG|1|X|U|1504
5NRG|1|X|G|1505
5NRG|1|X|C|1506
5NRG|1|X|A|1507
5NRG|1|X|C|1508
5NRG|1|X|G|1509
5NRG|1|X|U|1510
5NRG|1|X|C|1511
*
5NRG|1|X|G|1569
5NRG|1|X|G|1570
5NRG|1|X|G|1571
5NRG|1|X|G|1572
5NRG|1|X|A|1573
5NRG|1|X|G|1574
5NRG|1|X|A|1575
5NRG|1|X|G|1591
5NRG|1|X|A|1592
5NRG|1|X|G|1593
5NRG|1|X|U|1594
5NRG|1|X|C|1595
5NRG|1|X|G|1596
5NRG|1|X|U|1597
5NRG|1|X|U|1598

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L17