IL_5NRG_055

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

5NRG|1|X|U|1828, 5NRG|1|X|U|1843, 5NRG|1|X|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_055 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.0998

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5NRG|1|X|U|1825
5NRG|1|X|G|1826
5NRG|1|X|C|1827
5NRG|1|X|U|1828
5NRG|1|X|A|1829
5NRG|1|X|A|1830
5NRG|1|X|A|1831
*
5NRG|1|X|U|1840
5NRG|1|X|G|1841
5NRG|1|X|A|1842
5NRG|1|X|U|1843
5NRG|1|X|G|1844
5NRG|1|X|U|1845
5NRG|1|X|A|1846
5NRG|1|X|U|1847
5NRG|1|X|A|1848

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2