IL_5NRG_061

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_061 not in the Motif Atlas

Homologous match to IL_4WF9_075

Geometric discrepancy: 0.2539

The information below is about IL_4WF9_075

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5NRG|1|X|U|1891
5NRG|1|X|U|1892
5NRG|1|X|A|1893
5NRG|1|X|G|1894
*
5NRG|1|X|C|1901
5NRG|1|X|G|1902
5NRG|1|X|A|1903
5NRG|1|X|A|1904
5NRG|1|X|G|1905

Current chains

Chain X

23S ribosomal RNA

Nearby chains