IL_5NRG_065

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

5NRG|1|X|C|2082, 5NRG|1|X|U|2640, 5NRG|1|X|A|2641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_065 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.0821

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

5NRG|1|X|A|2081
5NRG|1|X|C|2082
5NRG|1|X|G|2083
*
5NRG|1|X|C|2639
5NRG|1|X|U|2640
5NRG|1|X|A|2641
5NRG|1|X|U|2642

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32