IL_5NRG_080

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5NRG|1|X|G|2603, 5NRG|1|X|A|2604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_080 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.0549

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5NRG|1|X|C|2537
5NRG|1|X|U|2538
5NRG|1|X|C|2539
*
5NRG|1|X|G|2601
5NRG|1|X|C|2602
5NRG|1|X|G|2603
5NRG|1|X|A|2604
5NRG|1|X|G|2605

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain Z

50S ribosomal protein L32