IL_5NRG_082

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

5NRG|1|X|A|2569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_082 not in the Motif Atlas

Homologous match to IL_7RQB_099

Geometric discrepancy: 0.0567

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

5NRG|1|X|U|2549
5NRG|1|X|G|2550
*
5NRG|1|X|C|2567
5NRG|1|X|A|2568
5NRG|1|X|A|2569
5NRG|1|X|G|2570

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L13