IL_5NRG_085

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_085 not in the Motif Atlas

Geometric match to IL_4WF9_100

Geometric discrepancy: 0.0755

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5NRG|1|X|U|2679
5NRG|1|X|U|2680
5NRG|1|X|A|2681
5NRG|1|X|G|2682
5NRG|1|X|U|2683
5NRG|1|X|A|2684
5NRG|1|X|C|2685
*
5NRG|1|X|G|2690
5NRG|1|X|G|2691
5NRG|1|X|A|2692
5NRG|1|X|C|2693
5NRG|1|X|C|2694
5NRG|1|X|G|2695

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6