IL_5NRG_093

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CUGG*CAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_093 not in the Motif Atlas

Homologous match to IL_4WF9_109

Geometric discrepancy: 0.0936

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5NRG|1|Y|C|2
5NRG|1|Y|U|3
5NRG|1|Y|G|4
5NRG|1|Y|G|5
*
5NRG|1|Y|C|110
5NRG|1|Y|A|111
5NRG|1|Y|G|112
5NRG|1|Y|G|113

Current chains

Chain Y

5S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L18