IL_5NRG_094

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

5NRG|1|Y|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_094 not in the Motif Atlas

Homologous match to IL_4WF9_112

Geometric discrepancy: 0.1541

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5NRG|1|Y|C|15
5NRG|1|Y|A|16
*
5NRG|1|Y|U|63
5NRG|1|Y|A|64
5NRG|1|Y|G|65

Current chains

Chain Y

5S ribosomal RNA

Nearby chains

Chain X

Large subunit ribosomal RNA; LSU rRNA