IL_5NRG_098

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_098 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0802

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5NRG|1|X|G|1710
5NRG|1|X|G|1711
5NRG|1|X|A|1712
5NRG|1|X|A|1713
5NRG|1|X|C|1714
5NRG|1|X|U|1715
5NRG|1|X|C|1716
5NRG|1|X|G|1717
5NRG|1|X|G|1718
*
5NRG|1|X|C|2017
5NRG|1|X|U|2018
5NRG|1|X|G|2019
5NRG|1|X|U|2020
5NRG|1|X|C|2021

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14