IL_5NRG_101

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGCACCA*UGGUGG

Length

13 nucleotides

Bulged bases

5NRG|1|X|G|2230, 5NRG|1|X|C|2231

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NRG_101 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3666

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5NRG|1|X|C|2229
5NRG|1|X|G|2230
5NRG|1|X|C|2231
5NRG|1|X|A|2232
5NRG|1|X|C|2233
5NRG|1|X|C|2234
5NRG|1|X|A|2235
*
5NRG|1|X|U|2243
5NRG|1|X|G|2244
5NRG|1|X|G|2245
5NRG|1|X|U|2246
5NRG|1|X|G|2247
5NRG|1|X|G|2248

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2